Copyright
©The Author(s) 2016.
世界华人消化杂志. 2016-04-18; 24(11): 1664-1675
在线出版 2016-04-18. doi: 10.11569/wcjd.v24.i11.1664
在线出版 2016-04-18. doi: 10.11569/wcjd.v24.i11.1664
表2 Reads与参考基因组比对情况一览表
| 样品名称 | Total reads | Total mapped[n(%)] | Multiple mapped[n(%)] | Uniquely mapped[n(%)] | Reads map to '+'[n(%)] | Reads map to '-'[n(%)] | Non-splice reads[n(%)] | Splice reads[n(%)] |
| HUC1 | 36445722 | 32670253(89.64) | 902942(2.48) | 31767311(87.16) | 15883705(43.58) | 15883606(43.58) | 19414598(53.27) | 12352713(33.89) |
| HUC2 | 39286974 | 35182541(89.55) | 1337075(3.40) | 33845466(86.15) | 16902604(43.02) | 16942862(43.13) | 22266843(56.68) | 11578623(29.47) |
| HUC3 | 40844192 | 37036980(90.68) | 894244(2.19) | 36142736(88.49) | 18044358(44.18) | 18098378(44.31) | 22278103(54.54) | 13864633(33.95) |
| HUP1 | 28825038 | 24692788(85.66) | 729078(2.53) | 23963710(83.14) | 11974500(41.54) | 11989210(41.59) | 16050121(55.68) | 7913589(27.45) |
| HUP2 | 29416982 | 25345056(86.16) | 842482(2.86) | 24502574(83.29) | 12251984(41.65) | 12250590(41.64) | 16617415(56.49) | 7885159(26.80) |
| HUP3 | 26121448 | 22625535(86.62) | 711245(2.72) | 21914290(83.89) | 10951977(41.93) | 10962313(41.97) | 14151326(54.18) | 7762964(29.72) |
| HUNL1 | 30130374 | 26312376(87.33) | 715190(2.37) | 25597186(84.95) | 12793386(42.46) | 12803800(42.49) | 15534005(51.56) | 10063181(33.40) |
| HUNL2 | 33942944 | 30050836(88.53) | 841963(2.48) | 29208873(86.05) | 14587310(42.98) | 14621563(43.08) | 15736894(46.36) | 13471979(39.69) |
| HUNL3 | 38802132 | 33493766(86.32) | 1004978(2.59) | 32488788(83.73) | 16234641(41.84) | 16254147(41.89) | 22506362(58.00) | 9982426(25.73) |
| TSBC | 24849984 | 18710366(75.29) | 705691(2.84) | 18004675(72.45) | 8974953(36.12) | 9029722(36.34) | 9993900(40.22) | 8010775(32.24) |
| TSBP | 29447898 | 22482581(76.35) | 637820(2.17) | 21844761(74.18) | 10898661(37.01) | 10946100(37.17) | 13060258(44.35) | 8784503(29.83) |
| TSFC1 | 26848966 | 20049832(74.68) | 654623(2.44) | 19395209(72.24) | 9657952(35.97) | 9737257(36.27) | 12109987(45.10) | 7285222(27.13) |
| TSFC2 | 30852496 | 21632114(70.11) | 609183(1.97) | 21022931(68.14) | 10470694(33.94) | 10552237(34.20) | 12900309(41.81) | 8122622(26.33) |
| TSFC3 | 29078526 | 21826058(75.06) | 669998(2.30) | 21156060(72.75) | 10547223(36.27) | 10608837(36.48) | 11840645(40.72) | 9315415(32.04) |
| TSFP1 | 26992530 | 20716728(76.75) | 591861(2.19) | 20124867(74.56) | 10060447(37.27) | 10064420(37.29) | 11516169(42.66) | 8608698(31.89) |
| TSFP2 | 29218694 | 20576757(70.42) | 604349(2.07) | 19972408(68.35) | 9978186(34.15) | 9994222(34.20) | 11189601(38.30) | 8782807(30.06) |
| TSFP3 | 26041320 | 20182818(77.50) | 654774(2.51) | 19528044(74.99) | 9774814(37.54) | 9753230(37.45) | 10583948(40.64) | 8944096(34.35) |
| TSNL1 | 25418372 | 18226500(71.71) | 514545(2.02) | 17711955(69.68) | 8828112(34.73) | 8883843(34.95) | 9953996(39.16) | 7757959(30.52) |
| TSNL2 | 26866832 | 19460969(72.43) | 617362(2.30) | 18843607(70.14) | 9401317(34.99) | 9442290(35.14) | 9717239(36.17) | 9126368(33.97) |
| TSNL3 | 31788066 | 24301296(76.45) | 663093(2.09) | 23638203(74.36) | 11765212(37.01) | 11872991(37.35) | 15042194(47.32) | 8596009(27.04) |
引文著录: 史俊林, 罗旺, 李瑗, 杨春, 唐艳萍, 李科志, 曹骥. 基于RNA-Seq技术的跨种属跨病因肝癌差异表达基因的筛选. 世界华人消化杂志 2016; 24(11): 1664-1675