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©2011 Baishideng Publishing Group Co.
World J Gastroenterol. Feb 7, 2011; 17(5): 609-617
Published online Feb 7, 2011. doi: 10.3748/wjg.v17.i5.609
Published online Feb 7, 2011. doi: 10.3748/wjg.v17.i5.609
Bacteriocin type | Primer name | 5'-sequence-3' | Length of PCR product (nt) |
A | ColA-F | CGTGGGGAAAAGTCATCATC | |
ColA-R | GCTTTGCTCTTTCCTGATGC | 475 | |
B | colicinB-F | AAGAAAATGACGAGAAGACG | |
colicinB-R | GAAAGACCAAAGGCTATAAGG | 493 | |
D | ColD-F | CTGGACTGCTGCTGGTGATA | |
ColD-R | GAAGGTGCGCCTACTACTGC | 420 | |
E1 | colicinE1-F | TGTGGCATCGGGCGAGAATA | |
colicinE1-R | CTGCTTCCTGAAAAGCCTTTT | 650 | |
E2 | ColE2-F | TGATGCTGCTGCAAAAGAG | |
ColE2-R | TTCAAAGCGTTCCCTACCAC | 409 | |
E3 | ColE3-F | TAAGCAGGCTGCATTTGATG | |
ColE3-R | TCGGATCTGGACCTTTCAAC | 413 | |
E4 | ColE4-F | GAAGGCTGCATTTGATGCT | |
ColE4-R | CGGATCCGGACCTTTAATTT | 409 | |
E5 | ColE3-F | TAAGCAGGCTGCATTTGATG | |
ColE5-R | TTGAATTCTCGAATCGTCCA | 430 | |
E6 | ColE6-F | ACCGAACGTCCAGGTGTT | |
ColE6-R | TTTAGCCTGTCGCTCCTGAT | 399 | |
E7 | ColE7-F | GCATTCTGCCATCTGAAAT | |
ColE7-R | CTTCTGCCCACTTTCTTTCG | 431 | |
E8 | ColE3-F | TAAGCAGGCTGCATTTGATG | |
ColE8-R | GACTGATTGGCTTGTCGTGA | 449 | |
E9 | ColE3-F | TAAGCAGGCTGCATTTGATG | |
ColE9-R | GACTTTTCTCCCTCCGACCT | 418 | |
Ia | ColIa-F | GCATGCAAATGACGCTCTTA | |
ColIa-R | GAGGACGCCAGTTCTCTGTC | 473 | |
Ib | ColIb-F | AACGAGTGGGTCGATGATTC | |
ColIb-R | CCTTTTCTGCGCTCGTATTC | 464 | |
Js | ColJs-F | TCAAAATGTTTGGGCTCCTC | |
ColJs-R | TAATCTGCCCTGTCCCACTG | 254 | |
K | ColK-F | CAGAGGTCGCTGAACATGAA | |
ColK-R | TCCGCTAAATCCTGAGCAAT | 469 | |
M | ColM-F | GCTTACCACTTCGCAAAACC | |
ColM-R | GAGCGACTCTCCGATAATGC | 429 | |
N | ColN-F | AGCTTGGCGAGTATCTTGGA | |
ColN-R | CAACACAGCCCCGAATAAAC | 401 | |
S4 | ColS4-F | TATATGGCCCAACTGCTGGT | |
ColS4-R | CGTAAGGACGGACACCTGTT | 456 | |
U | ColU-F | TGATTGCTGCGAGAAAAATG | |
ColU-R | TCTGACAGCCTCTCCCTGTT | 485 | |
Y | ColY-F | GCAGGCAGAAAAGAACAAGG | |
ColY-R | CGGACGTTATTTGCCTTCAT | 477 | |
5 | Col5-F | CATTGGCAAAAGCGAAATCT | |
Col5-R | TGCAACTCTGGAAACAATCG | 443 | |
10 | Col10-F | GGTTACCGGATTTCCTGGAT | |
Col10-R | TTCTAGATGCTTGGCCCACT | 448 |
Parameter | Small intestine | Colon and rectum | ||||
Bacterio-cinogeny | Types of bacteriocin producers (No. of strains) | No. of unique bacteriocin producers | Bacterio-cinogeny | Types of bacteriocin producers (No. of strains) | No. of unique bacteriocin producers | |
Group A | 22/55 (40%) | E1 (1); E1, Ia, V (1); E1, V (2); Ia (2); Ia, B, K, M, H47 (2); Ia, H47, V (2); Ia, V (6); Ib (3); J25 (1); S4, U (1); S4, V (1) | 11 | 30/94 (32%) | B (1); B, H47, Ib, K, M (2); B, M (1); C7, E1, Ib, V (1); E1 (1); E1, Ia (1); E1, Ia, V (1); E1, V (2); E7 (1); H47, Ia, V (1); H47, S4 (1); H47, V (2); Ia (6); Ia, V (4); Ib (3); M (1); S4, V (1) | 17 |
Group B | 11/43 (26%) | E1 (7); Ia (2); Ia, V, H47 (1); Ib (1) | 4 | 20/79 (25%) | B, H47, K, M, Ia (1); B, M (1); E1 (4); E1, V (1); Ia (11); Ia, V (1); Ib (1) | 7 |
Group C | 17/58 (29%) | B, M, V (1); Ia (1); Ia, V (7); Ib (6); S4 (2) | 5 | 26/97 (27%) | B, Ia, (1); E1, Ib (1); J25, Ia (1); Ia (5); Ia, E7, V (1); Ia, H47 (1); Ia, M (1); Ia, V (8); Ib (7) | 9 |
Group D | 9/45 (20%) | E1 (3); E1, Ia (1); E1, Ia, V (1); E1, Ib (1); Ia (1); Ia, V (1); Ib (1) | 7 | 20/89 (22%) | E1 (4); E1, Ia (1); E1, Ia, V (1); E1, Ib (2); H47, V (1); Ia (7); Ia, V (1); Ib (2); Ib, V (1) | 9 |
Group | Hydrogen before | Hydrogen after | Statistical significance | Methane before | Methane after | Statistical significance |
A | N/A | 3.50 ± 2.81 | N/A | N/A | 69.33 ± 56.64 | N/A |
B | 6.0 ± 2.82 | 2.0 ± 0 | NS | 106.50 ± 94.05 | 80.00 ± 48.02 | NS |
C | 1.17 ± 0.41 | 5.0 ± 3.29 | NS | 34.67 ± 25.65 | 66.17 ± 38.83 | NS |
D | 2.0 ± 1.16 | 6.0 ± 6.0 | NS | 60.75 ± 34.77 | 62.00 ± 27.71 | NS |
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Citation: Bures J, Smajs D, Kvetina J, Förstl M, Smarda J, Kohoutova D, Kunes M, Cyrany J, Tacheci I, Rejchrt S, Lesna J, Vorisek V, Kopacova M. Bacteriocinogeny in experimental pigs treated with indomethacin and
Escherichia coli Nissle . World J Gastroenterol 2011; 17(5): 609-617 - URL: https://www.wjgnet.com/1007-9327/full/v17/i5/609.htm
- DOI: https://dx.doi.org/10.3748/wjg.v17.i5.609