Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections

doi:10.3748/wjg.v27.i14.1465

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World Journal of Gastroenterology

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1007-9327

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Baishideng Publishing Group Inc, 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA

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World J Gastroenterol. Apr 14, 2021; 27(14): 1465-1482
Published online Apr 14, 2021. doi: 10.3748/wjg.v27.i14.1465

Table 9 Differentially expressed genes, Black/African Ancestry vs not Black/African Ancestry, common to both tumor and nontumor samples

Gene	Symbol	Tumor log₂fold change	Tumor adjusted P value	Nontumor log₂fold change	Nontumor adjusted P value
Decreased
ENSG00000155959	VBP1	-8.217	5.26 × 10^-10	-8.318	5.26 × 10^-10
ENSG00000102109	PCSK1N	-5.965	0.0050	-7.175	0.0004
Increased
ENSG00000225972	MTND1P23	4.0913	5.67 × 10^-7	3.801	0.0001

Citation: Malik SA, Zhu C, Li J, LaComb JF, Denoya PI, Kravets I, Miller JD, Yang J, Kramer M, McCombie WR, Robertson CE, Frank DN, Li E. Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections. World J Gastroenterol 2021; 27(14): 1465-1482
URL: https://www.wjgnet.com/1007-9327/full/v27/i14/1465.htm
DOI: https://dx.doi.org/10.3748/wjg.v27.i14.1465