Copyright
©The Author(s) 2018.
World J Gastroenterol. Feb 7, 2018; 24(5): 602-612
Published online Feb 7, 2018. doi: 10.3748/wjg.v24.i5.602
Published online Feb 7, 2018. doi: 10.3748/wjg.v24.i5.602
Gene | Genotype | Number of participants | GSTP1 rs1695 | |||
AA | GA + GG | AA + GA | GG | |||
AG vs CON | ||||||
(n = 634 vs 620 ) | ||||||
ERCC5 rs1047768 | TT | No. of cases/controls | 231/200 | 124/116 | 338/307 | 17/9 |
OR (95%CI) | 1 (Ref.) | 0.93 (0.68-1.27) | 1 (Ref.) | 1.72 (0.75-3.91) | ||
TC + CC | No. of cases/controls | 177/188 | 102/116 | 270/289 | 9/15 | |
OR (95%CI) | 0.82 (0.62-1.08) | 0.76 (0.55-1.06) | 0.85 (0.68-1.07) | 0.55 (0.24-1.26) | ||
Pinteraction = 0.317 | Pinteraction = 0.683 | |||||
Interaction index = 0.88 | Interaction index = 1.13 | |||||
TT + TC | No. of cases/controls | 376/345 | 207/214 | 559/538 | 24/21 | |
OR (95%CI) | 1 (Ref.) | 0.89 (0.70-1.13) | 1 (Ref.) | 1.10 (0.61-2.00) | ||
CC | No. of cases/controls | 32/43 | 19/18 | 49/58 | 2/3 | |
OR (95%CI) | 0.68 (0.42-1.10) | 0.97 (0.50-1.87) | 0.81 (0.55-1.21) | 0.64 (0.11-3.86) | ||
Pinteraction = 0.296 | Pinteraction = 0.531 | |||||
Interaction index = 0.88 | Interaction index = 0.88 | |||||
ERCC5 rs2094258 | GG | No. of cases/controls | 132/162 | 93/84 | 214/234 | 11/12 |
OR (95%CI) | 1 (Ref.) | 1.36 (0.94-1.98) | 1 (Ref.) | 1.00 (0.43-2.32) | ||
GA + AA | No. of cases/controls | 276/226 | 133/148 | 394/362 | 15/12 | |
OR (95%CI) | 1.50 (1.12-2.00) | 1.10 (0.79-1.53) | 1.19 (0.94-1.50) | 1.37 (0.63-2.99) | ||
Pinteraction = 0.008 | Pinteraction = 0.842 | |||||
Interaction index = 0.51 | Interaction index = 1.13 | |||||
GG + GA | No. of cases/controls | 337/328 | 195/204 | 508/510 | 24/22 | |
OR (95%CI) | 1 (Ref.) | 0.93 (0.73-1.19) | 1 (Ref.) | 1.10 (0.61-1.98) | ||
AA | No. of cases/controls | 71/60 | 31/28 | 100/86 | 2/2 | |
OR (95%CI) | 1.15 (0.79-1.68) | 1.08 (0.63-1.84) | 1.17 (0.85-1.60) | 1.00 (0.14-7.15) | ||
Pinteraction = 0.594 | Pinteraction = 0.620 | |||||
Interaction index = 0.83 | Interaction index = 0.58 | |||||
ERCC5 rs2228959 | CC | No. of cases/controls | 371/346 | 198/215 | 548/539 | 21/22 |
OR (95%CI) | 1 (Ref.) | 0.86 (0.67-1.09) | 1 (Ref.) | 0.94 (0.51-1.73) | ||
CA + AA | No. of cases/controls | 37/42 | 28/17 | 60/57 | 5/2 | |
OR (95%CI) | 0.82 (0.52-1.31) | 1.54 (0.83-2.86) | 1.04 (0.71-1.52) | 2.46 (0.48-12.73) | ||
Pinteraction = 0.103 | Pinteraction = 0.435 | |||||
Interaction index = 2.00 | Interaction index = 2.11 | |||||
CC + CA | No. of cases/controls | 408/383 | 224/231 | 606/590 | 26/24 | |
OR (95%CI) | 1 (Ref.) | 0.91 (0.72-1.15) | 1 (Ref.) | 1.06 (0.60-1.86) | ||
AA | No. of cases/controls | 0/5 | 2/1 | 2/6 | 0/0 | |
OR (95%CI) | NA | 1.88 (0.17-20.79) | 0.32 (0.07-1.61) | NA | ||
Pinteraction = NA | Pinteraction = 0.720 | |||||
Interaction index = NA | Interaction index = 1.12 | |||||
ERCC5 rs4150291 | AA | No. of cases/controls | 347/332 | 193/205 | 517/516 | 23/21 |
OR (95%CI) | 1 (Ref.) | 0.90 (0.70-1.15) | 1 (Ref.) | 1.09 (0.60-2.00) | ||
AT + TT | No. of cases/controls | 61/56 | 33/27 | 91/80 | 3/3 | |
OR (95%CI) | 1.04 (0.70-1.54) | 1.17 (0.69-1.99) | 1.14 (0.82-1.57) | 1.00 (0.20-4.97) | ||
Pinteraction = 0.667 | Pinteraction = 0.679 | |||||
Interaction index = 1.17 | Interaction index = 0.68 | |||||
AA + AT | No. of cases/controls | 406/382 | 225/232 | 605/590 | 26/24 | |
OR (95%CI) | 1 (Ref.) | 0.91 (0.73-1.15) | 1 (Ref.) | 1.06 (0.60-1.86) | ||
TT | No. of cases/controls | 2/6 | 1/0 | 3/6 | 0/0 | |
OR (95%CI) | 0.31 (0.06-1.56) | NA | 0.49 (0.12-1.96) | NA | ||
Pinteraction = NA | Pinteraction = 0.703 | |||||
Interaction index = NA | Interaction index = 1.12 | |||||
ERCC5 rs4150383 | GG | No. of cases/controls | 365/344 | 197/202 | 539/526 | 23/20 |
OR (95%CI) | 1 (Ref.) | 0.92 (0.72-1.18) | 1 (Ref.) | 1.12 (0.61-2.07) | ||
GA + AA | No. of cases/controls | 43/44 | 29/30 | 69/70 | 3/4 | |
OR (95%CI) | 0.92 (0.59-1.44) | 0.91 (0.54-1.55) | 0.96 (0.68-1.37) | 0.73 (0.16-3.29) | ||
Pinteraction = 0.720 | Pinteraction = 0.894 | |||||
Interaction index = 1.15 | Interaction index = 1.12 | |||||
GG + GA | No. of cases/controls | 406/387 | 226/231 | 606/594 | 26/24 | |
OR (95%CI) | 1 (Ref.) | 0.93 (0.74-1.17) | 1 (Ref.) | 1.06 (0.60-1.87) | ||
AA | No. of cases/controls | 2/1 | 0/1 | 2/2 | 0/0 | |
OR (95%CI) | 1.91 (0.17-21.11) | NA | 0.98 (0.14-6.98) | NA | ||
Pinteraction = NA | Pinteraction = 0.695 | |||||
interaction index = NA | interaction index = 1.13 | |||||
ERCC5 rs751402 | CC | No. of cases/controls | 191/173 | 97/104 | 281/266 | 7/11 |
OR (95%CI) | 1 (Ref.) | 0.85 (0.60-1.19) | 1 (Ref.) | 0.60 (0.23-1.58) | ||
CT + TT | No. of cases/ controls | 203/198 | 124/118 | 308/303 | 19/13 | |
OR (95%CI) | 0.93 (0.70-1.23) | 0.95 (0.69-1.32) | 0.96 (0.76-1.21) | 1.38 (0.67-2.86) | ||
Pinteraction = 0.196 | Pinteraction = 0.109 | |||||
Interaction index = 1.39 | Interaction index = 2.84 | |||||
CC + CT | No. of cases/ controls | 355/324 | 193/196 | 526/500 | 22/20 | |
OR (95%CI) | 1 (Ref.) | 0.90 (0.70-1.15) | 1 (Ref.) | 1.05 (0.56-1.94) | ||
TT | No. of cases/ controls | 39/47 | 28/26 | 63/69 | 4/4 | |
OR (95%CI) | 0.76 (0.48-1.19) | 0.98 (0.56-1.71) | 0.87 (0.60-1.25) | 0.95 (0.24-3.81) | ||
Pinteraction = 0.488 | Pinteraction = 0.886 | |||||
Interaction index = 1.31 | Interaction index = 1.13 | |||||
ERCC5 rs873601 | GG | No. of cases/ controls | 126/109 | 57/59 | 178/165 | 5/3 |
OR (95%CI) | 1 (Ref.) | 0.84 (0.54-1.30) | 1 (Ref.) | 1.55 (0.36-6.57) | ||
GA + AA | No. of cases/ controls | 282/279 | 169/173 | 430/431 | 21/21 | |
OR (95%CI) | 0.87 (0.64-1.19) | 0.85 (0.61-1.18) | 0.93 (0.72-1.19) | 0.93 (0.49-1.76) | ||
Pinteraction = 0.197 | Pinteraction = 0.770 | |||||
Interaction index = 1.44 | Interaction index = 0.78 | |||||
GG + GA | No. of cases/ controls | 321/279 | 167/177 | 473/441 | 15/15 | |
OR (95%CI) | 1 (Ref.) | 0.82 (0.63-1.07) | 1 (Ref.) | 0.93 (0.45-1.93) | ||
AA | No. of cases/ controls | 87/109 | 59/55 | 135/155 | 11/9 | |
OR (95%CI) | 0.69 (0.50-0.96) | 0.93 (0.62-1.39) | 0.81 (0.62-1.06) | 1.14 (0.47-2.78) | ||
Pinteraction = 0.043 | Pinteraction = 0.488 | |||||
Interaction index = 1.79 | Interaction index = 1.55 | |||||
GC vs CON | ||||||
(n = 450 vs 535 ) | ||||||
ERCC5 rs1047768 | TT | No. of cases/ controls | 142/162 | 78/105 | 204/259 | 16/8 |
OR (95%CI) | 1 (Ref.) | 0.85 (0.59-1.23) | 1 (Ref.) | 2.54 (1.07-6.05) | ||
TC + CC | No. of cases/ controls | 128/164 | 102/104 | 211/255 | 19/13 | |
OR (95%CI) | 0.89 (0.65-1.23) | 1.12 (0.79-1.59) | 1.05 (0.81-1.36) | 1.86 (0.89-3.85) | ||
Pinteraction = 0.101 | Pinteraction = 0.594 | |||||
interaction index = 1.56 | interaction index = 0.73 | |||||
TT + TC | No. of cases/ controls | 247/292 | 158/193 | 374/467 | 31/18 | |
OR (95%CI) | 1 (Ref.) | 0.97 (0.74-1.27) | 1 (Ref.) | 2.15 (1.18-3.91) | ||
CC | No. of cases/ controls | 23/24 | 22/16 | 41/47 | 4/3 | |
OR (95%CI) | 0.80 (0.46-1.39) | 1.63 (0.84-3.16) | 1.09 (0.70-1.69) | 1.67 (0.37-7.49) | ||
Pinteraction = 0.115 | Pinteraction = 0.640 | |||||
Interaction index = 2.07 | Interaction index = 0.66 | |||||
ERCC5 rs2094258 | GG | No. of cases/ controls | 110/131 | 66/77 | 165/197 | 11/11 |
OR (95%CI) | 1 (Ref.) | 1.02 (0.67-1.55) | 1 (Ref.) | 1.19 (0.51-2.82) | ||
GA + AA | No. of cases/ controls | 160/195 | 114/132 | 250/317 | 24/10 | |
OR (95%CI) | 0.98 (0.70-1.36) | 1.03 (0.72-1.47) | 0.94 (0.72-1.23) | 2.87 (1.33-6.17) | ||
Pinteraction = 0.923 | Pinteraction = 0.134 | |||||
Interaction index = 0.97 | Interaction index = 2.47 | |||||
GG + GA | No. of cases/ controls | 226/275 | 158/185 | 352/441 | 32/19 | |
OR (95%CI) | 1 (Ref.) | 1.04 (0.79-1.37) | 1 (Ref.) | 2.11 (1.18-3.79) | ||
AA | No. of cases/ controls | 44/51 | 22/24 | 63/73 | 3/2 | |
OR (95%CI) | 1.05 (0.68-1.63) | 1.12 (0.61-2.04) | 1.08 (0.75-1.56) | 1.88 (0.31-11.31) | ||
Pinteraction = 0.801 | Pinteraction = 0.834 | |||||
Interaction index = 0.90 | Interaction index = 0.81 | |||||
ERCC5 rs2228959 | CC | No. of cases/ controls | 247/295 | 164/194 | 380/470 | 31/19 |
OR (95%CI) | 1 (Ref.) | 1.01 (0.77-1.32) | 1 (Ref.) | 2.02 (1.12-3.63) | ||
CA + AA | No. of cases/ controls | 23/31 | 16/15 | 35/44 | 4/2 | |
OR (95%CI) | 0.89 (0.50-1.56) | 1.27 (0.62-2.63) | 0.98 (0.62-1.57) | 2.47 (0.45-13.58) | ||
Pinteraction = 0.491 | Pinteraction = 0.813 | |||||
Interaction index = 1.40 | Interaction index = 1.26 | |||||
CC + CA | No. of cases/ controls | 268/322 | 180/208 | 413/509 | 35/21 | |
OR (95%CI) | 1 (Ref.) | 1.04 (0.80-1.35) | 1 (Ref.) | 2.05 (1.18-3.58) | ||
AA | No. of cases/ controls | 2/4 | 0/1 | 2/5 | 0/0 | |
OR (95%CI) | 0.60 (0.11-3.31) | NA | 0.49 (0.10-2.55) | NA | ||
Pinteraction = NA | Pinteraction = NA | |||||
Interaction index = NA | Interaction index = NA | |||||
ERCC5 rs4150291 | AA | No. of cases/ controls | 222/276 | 143/182 | 338/440 | 27/18 |
OR (95%CI) | 1 (Ref.) | 0.98 (0.74-1.29) | 1 (Ref.) | 1.95 (1.06-3.61) | ||
AT + TT | No. of cases/ controls | 48/50 | 37/27 | 77/74 | 8/3 | |
OR (95%CI) | 1.19 (0.77-1.84) | 1.70 (1.01-2.89) | 1.36 (0.96-1.92) | 3.47 (0.91-13.18) | ||
Pinteraction = 0.385 | Pinteraction = 0.818 | |||||
Interaction index = 1.37 | Interaction index = 1.20 | |||||
AA + AT | No. of cases/ controls | 267/321 | 177/209 | 410/509 | 34/21 | |
OR (95%CI) | 1 (Ref.) | 1.02 (0.79-1.32) | 1 (Ref.) | 2.01 (1.15-3.52) | ||
TT | No. of cases/ controls | 3/5 | 3/0 | 5/5 | 1/0 | |
OR (95%CI) | 0.72 (0.17-3.05) | NA | 1.24 (0.36-4.32) | NA | ||
Pinteraction = NA | Pinteraction = NA | |||||
Interaction index = NA | Interaction index = NA | |||||
ERCC5 rs4150383 | GG | No. of cases/ controls | 237/288 | 168/180 | 373/451 | 32/17 |
OR (95%CI) | 1 (Ref.) | 1.13 (0.86-1.49) | 1 (Ref.) | 2.28 (1.24-4.16) | ||
GA + AA | No. of cases/ controls | 33/38 | 12/29 | 42/63 | 3/4 | |
OR (95%CI) | 1.06 (0.64-1.74) | 0.50 (0.25-1.01) | 0.81 (0.53-1.22) | 0.91 (0.20-4.08) | ||
Pinteraction = 0.060 | Pinteraction = 0.497 | |||||
Interaction index = 0.43 | Interaction index = 0.55 | |||||
GG + GA | No. of cases/ controls | 270/325 | 180/208 | 415/512 | 35/21 | |
OR (95%CI) | 1 (Ref.) | 1.04 (0.81-1.35) | 1 (Ref.) | 2.06 (1.18-3.59) | ||
AA | No. of cases/ controls | 0/1 | 0/1 | 0/2 | 0/0 | |
OR (95%CI) | NA | NA | NA | NA | ||
Pinteraction = NA | Pinteraction = NA | |||||
Interaction index = 0.90 | Interaction index = NA | |||||
ERCC5 rs751402 | CC | No. of cases/ controls | 114/149 | 82/90 | 180/229 | 16/10 |
OR (95%CI) | 1 (Ref.) | 1.19 (0.81-1.75) | 1 (Ref.) | 2.04 (0.90-4.59) | ||
CT + TT | No. of cases/ controls | 142/161 | 89/109 | 212/259 | 19/11 | |
OR (95%CI) | 1.15 (0.83-1.61) | 1.07 (0.74-1.55) | 1.04 (0.80-1.36) | 2.20(1.02-4.74) | ||
Pinteraction = 0.453 | Pinteraction = 0.945 | |||||
Interaction index = 0.81 | Interaction index = 0.96 | |||||
CC + CT | No. of cases/ controls | 225/275 | 156/174 | 348/432 | 33/17 | |
OR (95%CI) | 1 (Ref.) | 1.10 (0.83-1.45) | 1 (Ref.) | 2.41 (1.32-4.40) | ||
TT | No. of cases/ controls | 31/35 | 15/25 | 44/56 | 2/4 | |
OR (95%CI) | 1.08 (0.65-1.81) | 0.73 (0.38-1.42) | 0.98 (0.64-1.48) | 0.62 (0.11-3.41) | ||
Pinteraction = 0.409 | Pinteraction = 0.241 | |||||
Interaction index = 0.69 | Interaction index = 0.32 | |||||
No. of cases/ controls | 79/91 | 55/53 | 122/141 | 12/3 | ||
ERCC5 rs873601 | GG | OR (95%CI) | 1 (Ref.) | 1.20 (0.74-1.94) | 1 (Ref.) | 4.62 (1.28-16.76) |
No. of cases/ controls | 191/235 | 125/156 | 293/373 | 23/18 | ||
GA + AA | OR (95%CI) | 0.94 (0.66-1.34) | 0.92 (0.63-1.35) | 0.91 (0.68-1.21) | 1.48 (0.76-2.87) | |
Pinteraction = 0.901 | Pinteraction = 0.217 | |||||
Interaction index = 0.96 | Interaction index = 0.40 | |||||
No. of cases/ controls | 205/232 | 139/156 | 317/375 | 27/13 | ||
GG + GA | OR (95%CI) | 1 (Ref.) | 1.01 (0.75-1.36) | 1 (Ref.) | 2.46 (1.25-4.84) | |
No. of cases/ controls | 65/94 | 41/35 | 98/139 | 8/8 | ||
AA | OR (95%CI) | 0.78 (0.54-1.13) | 0.88 (0.56-1.37) | 0.83(0.62-1.12) | 1.18 (0.44-3.18) | |
Pinteraction = 0.477 | Pinteraction = 0.384 | |||||
Interaction index = 1.25 | Interaction index = 0.57 |
- Citation: Sang L, Lv Z, Sun LP, Xu Q, Yuan Y. Impact of SNP-SNP interactions of DNA repair gene ERCC5 and metabolic gene GSTP1 on gastric cancer/atrophic gastritis risk in a Chinese population. World J Gastroenterol 2018; 24(5): 602-612
- URL: https://www.wjgnet.com/1007-9327/full/v24/i5/602.htm
- DOI: https://dx.doi.org/10.3748/wjg.v24.i5.602