Copyright
©The Author(s) 2016.
World J Gastroenterol. Dec 21, 2016; 22(47): 10325-10340
Published online Dec 21, 2016. doi: 10.3748/wjg.v22.i47.10325
Published online Dec 21, 2016. doi: 10.3748/wjg.v22.i47.10325
Gene symbol | DNA methylation on age-related CpG site | Whole promoter DNA methylation status | ||||
cg ID | P value | Δβ | Start-Stop position | P value | Δβ | |
CRC vs N | ||||||
AKT3 | cg11314684 | 4.55 × 10-5 | -0.16 | chr1:244005801-244005900 | 6.56 × 10-3 | -0.33 |
ERG | cg17274064 | 1.48 × 10-4 | -0.11 | chr21:39871501-39871600 | 0.044 | -0.21 |
MGP | cg00431549 | 0.020 | -0.12 | chr12:15038501-15038600 | 0.030 | -0.27 |
CCR10 | cg09509673 | 1.91 × 10-4 | 0.11 | chr17:40835101-40835200 | 0.045 | 0.18 |
chr17:40835201-40835300 | 0.022 | 0.26 | ||||
PPP1R16B | cg24834740 | 3.56 × 10-12 | 0.37 | chr20:37433201-37433300 | 3.76 × 10-3 | 0.35 |
chr20:37434701-37434800 | 0.048 | 0.40 | ||||
chr20:37435301-37435400 | 0.042 | 0.37 | ||||
SFRP1 | cg02388150 | 3.33 × 10-3 | 0.10 | chr8:41166001-41166100 | 0.017 | 0.44 |
chr8:41166101-41166200 | 1.31 × 10-4 | 0.56 | ||||
chr8:41166201-41166300 | 3.40 × 10-3 | 0.49 | ||||
chr8:41166301-41166400 | 0.014 | 0.27 | ||||
chr8:41166401-41166500 | 1.28 × 10-3 | 0.53 | ||||
chr8:41166501-41166600 | 0.027 | 0.44 | ||||
chr8:41166601-41166700 | 0.034 | 0.39 | ||||
chr8:41166901-41167000 | 0.042 | 0.41 | ||||
SYNE1 | cg26620959 | 1.32 × 10-6 | 0.30 | chr6:152622201-152622300 | 0.027 | 0.35 |
chr6:152957601-152957700 | 0.032 | 0.39 | ||||
chr6:152957701-152957800 | 0.043 | 0.40 | ||||
chr6:152958101-152958200 | 2.86 × 10-4 | 0.65 | ||||
AD vs N | ||||||
CEMIP | cg20828084 | 1.33 × 10-9 | -0.17 | chr15: 81070701-81070800 | 0.028 | -0.25 |
SPATA18 | cg03103192 | 1.39 × 10-7 | -0.15 | chr4:52915901-52916000 | 0.042 | -0.23 |
DKK3 | cg13216057 | 9.64 × 10-4 | 0.18 | chr11:12029701-12029800 | 3.11 × 10-3 | 0.26 |
chr11:12029801-12029900 | 1.67 × 10-3 | 0.33 | ||||
chr11:12029901-12030000 | 8.08 × 10-5 | 0.56 | ||||
chr11:12030001-12030100 | 0.047 | 0.15 | ||||
chr11:12030401-12030500 | 7.38 × 10-3 | 0.28 | ||||
chr11: 12030501-12030600 | 0.012 | 0.28 | ||||
PPP1R16B | cg24834740 | 2.23 × 10-9 | 0.36 | chr20:37434201-37434300 | 0.045 | 0.26 |
chr20:37434601-37434700 | 0.022 | 0.39 | ||||
chr20:37434701-37434800 | 0.013 | 0.39 | ||||
chr20:37434801-37434900 | 6.87 × 10-3 | 0.30 | ||||
chr20:37434901-37435000 | 1.70 × 10-3 | 0.44 | ||||
chr20:37435001-37435100 | 1.93 × 10-3 | 0.45 | ||||
chr20:37435101-37435200 | 6.49 × 10-3 | 0.35 | ||||
chr20:37435201-37435300 | 8.93 × 10-4 | 0.51 | ||||
chr20:37435301-37435400 | 0.014 | 0.42 | ||||
SDC2 | cg25070637 | 1.82 × 10-5 | 0.30 | chr8:97505901-97506000 | 2.30 × 10-3 | 0.59 |
chr8:97506101-97506200 | 1.96 × 10-4 | 0.65 | ||||
chr8:97506201-97506300 | 8.43 × 10-4 | 0.63 | ||||
chr8:97506301-97506400 | 0.012 | 0.49 | ||||
chr8:97506401-97506500 | 0.019 | 0.47 | ||||
chr8:97506601-97506700 | 3.99 × 10-3 | 0.51 | ||||
chr8:97506701-97506800 | 0.021 | 0.45 | ||||
chr8:97506801-97506900 | 0.014 | 0.52 | ||||
chr8:97507101-97507200 | 0.015 | 0.44 | ||||
chr8:97507201-97507300 | 0.010 | 0.52 | ||||
chr8:97507301-97507400 | 3.47 × 10-3 | 0.59 | ||||
SFRP1 | cg02388150 | 1.20 × 10-7 | 0.15 | chr8:41165901-41166000 | 2.30 × 10-3 | 0.59 |
chr8:41166001-41166100 | 1.57 × 10-3 | 0.59 | ||||
chr8:41166101-41166200 | 3.54 × 10-4 | 0.56 | ||||
chr8:41166201-41166300 | 1.49 × 10-4 | 0.60 | ||||
chr8:41166301-41166400 | 6.54 × 10-3 | 0.27 | ||||
chr8:41166401-41166500 | 1.32 × 10-5 | 0.55 | ||||
chr8: 41166501-41166600 | 2.30 × 10-3 | 0.60 | ||||
chr8:41166601-41166700 | 5.45 × 10-3 | 0.57 | ||||
chr8:41166701-41166800 | 8.15 × 10-3 | 0.51 | ||||
chr8:41166801-41166900 | 0.032 | 0.39 | ||||
chr8:41166901-41167000 | 0.019 | 0.45 | ||||
chr8:41167001-41167100 | 0.046 | 0.34 | ||||
chr8:41167101-41167200 | 0.025 | 0.41 | ||||
chr8:41167201-41167300 | 0.024 | 0.40 | ||||
SYNE1 | cg26620959 | 3.89 × 10-6 | 0.29 | chr6:152702701-152702800 | 0.012 | 0.20 |
chr6:152702801-152702900 | 0.035 | 0.21 | ||||
chr6:152957501-152957600 | 6.05 × 10-4 | 0.37 | ||||
chr6:152957601-152957700 | 2.34 × 10-4 | 0.60 | ||||
chr6:152957701-152957800 | 0.017 | 0.51 | ||||
chr6:152957801-152957900 | 1.09 × 10-3 | 0.42 | ||||
chr6:152957901-152958000 | 1.03 × 10-4 | 0.57 | ||||
chr6:152958001-152958100 | 7.13 × 10-4 | 0.43 | ||||
chr6:152958101-152958200 | 1.72 × 10-5 | 0.72 | ||||
CRC vs AD | ||||||
CEMIP | cg20828084 | 2.00 × 10-8 | 0.14 | chr15:81070701-81070800 | 7.59 × 10-4 | 0.31 |
chr15:81070801-81070900 | 0.011 | 0.36 |
- Citation: Galamb O, Kalmár A, Barták BK, Patai &V, Leiszter K, Péterfia B, Wichmann B, Valcz G, Veres G, Tulassay Z, Molnár B. Aging related methylation influences the gene expression of key control genes in colorectal cancer and adenoma. World J Gastroenterol 2016; 22(47): 10325-10340
- URL: https://www.wjgnet.com/1007-9327/full/v22/i47/10325.htm
- DOI: https://dx.doi.org/10.3748/wjg.v22.i47.10325