Basic Study
Copyright ©The Author(s) 2016.
World J Gastroenterol. Nov 14, 2016; 22(42): 9346-9355
Published online Nov 14, 2016. doi: 10.3748/wjg.v22.i42.9346
Table 1 Primer sequences, polymerase chain reaction conditions, and product sizes of different genes
Polymorphism sitePrimer sequence (5'-3')PCR conditionsProduct size (bp)
TLR4 (Asp299gly)(1) 95 °C for 10 min249
(2) 35 cycles of :
F: GATTAGCATACTTAGACTACTACCTCCATG94 °C for 1 min
R: GATCAACTTCTGAAAAAGCATTCCCAC61.5 °C for 1 min
72 °C for 1 min
(3) 72 °C for 7 min
TLR4 (Thr399Ile)(1) 95 °C for 10 min406
(2) 35 cycles of :
F: GGTTGCTGTTCTCAAAGTGATTTTGGGAGAA94 °C for 1 min
R: CCTGAAGACTGGAGAGTGAGTTAAATGCT64.8 °C for 1 min
72 °C for 1 min
(3) 72 °C for 10 min
TLR2 (Arg753Gln)(1) 95 °C for 10 min289
(2) 35 cycles of :
F: 5’-CCTTCAAGTTGTGTCTTCATAAG-3’94 °C for 1 min
R: 5’-GGCCACTCCAGGTAGGTCTT-3’58.6 °C for 1 min
72 °C for 1 min
(3) 72 °C for 10 min
CD14 (-550C/T)(1) 95 °C for 10 min368
(2) 32 cycles of :
F: GGAAGGGGGAATTTTTCTTTAGGC94 °C for 1 min
R: -GGCAGTGTCCTGATGACTCA59.8 °C for 1 min
72 °C for 1 min
(3) 72 °C for 7 min
CD14 (-159C/T)(1) 95 °C for 10 min296
(2) 35 cycles of :
F: ATCATCCTTTTCCCACACC94 °C for 40 s
R: AACTCTTCGGCTGCCTCT61 °C for 40 s
72 °C for 40 s
(3) 72 °C for 10 min