Gene expression profiling of MYC-driven tumor signatures in porcine liver stem cells by transcriptome sequencing

Table 5 Genes expressed by both PICM-19 and PICM-19-CSCs that were not affected by MYC overexpression

Gene ID	Gene abbreviation	Function	Fold Δ1
SSC-MIR-425	MicroRNA mir-425	Gene regulation	7925.28
SNORD53	Small nucleolar RNA, C/D box 53	Gene regulation	4969.50
SSC-MIR-378-1	MicroRNA mir-378-1	Gene regulation	3962.64
SSC-MIR-99A	MicroRNA mir-99a	Gene regulation	3761.27
SSC-MIR-101-2	MicroRNA mir-101-2	Gene regulation	3400.56
SSC-LET-7F-2	MicroRNA let-7f-2	Gene regulation	2814.68
5s rRNA	5S ribosomal RNA	Protein synthesis	2255.63
SSC-MIR-210	MicroRNA mir-210	Gene regulation	1730.53
U6	Small nucleolar RNA U6	RNA interference	1187.43
SSC-MIR-196A-2	MicroRNA mir-196a-2	Gene regulation	1127.81
SCARNA15	Small Cajal body-specific RNA 15	Gene regulation	287.24
SNORA72	Small nucleolar RNA, H/ACA box 72	Gene regulation	255.25
SCARNA11	Small Cajal body-specific RNA 11	Gene regulation	163.50
RAMP2	Receptor (G protein-coupled) activity modifying protein 2	Protein transport	56.66
CCNI2	Cyclin I family member 2	Cell cycle	10.67
P4HTM	Prolyl 4-hydroxylase, transmembrane	Hypoxia	6.25
SPDYA	Speedy/RINGO cell cycle regulator family member A	Cell cycle	5.56
PARK2	Parkin RBR E3 ubiquitin ligase	Unknown	5.09
GRPR	Gastrin-releasing peptide receptor	Cell proliferation	4.52
ATG10	Autophagy related 10	Autophagy	3.76
PHYHIP	Phytanoyl-CoA hydroxylase interacting protein	Cell proliferation	3.41
DPEP1	Dipeptidase 1	Metabolism	2.72
DUROC-C2	Nuclear receptor corepressor 2	DNA binding	2.64
HIST1H2BH	Histone cluster 1, H2bh	Histone modification	2.58
PHKG1	Phosphorylase kinase, gamma 1	Glycogenolysis	2.52
TMEM79	Transmembrane protein 79	Protein secretion	2.04
APH1B	APH1B gamma secretase subunit	Protein transport	2.01
IRAK4	Interleukin-1 receptor-associated kinase 4	Cell signaling	2.01

¹Normalized to GAPDH expression.