Gastric precancerous lesions are associated with gene variants in Helicobacter pylori-susceptible ethnic Malays

Table 2 Single nucleotide polymorphisms associated with intestinal metaplasia among Malays with Helicobacter pylori

rs ID	Chromosome	Gene	Minor allele	Allele frequency		χ2	HWE
				Cases	Control	P-value	P-value
rs1166704	1p31.1	NEXN	B	0.375	0.031	0.0694	0.654
rs2191508	2q32.3	SLC39A10	A	0.081	0.375	0.297	0.591
rs1992736	3p24.3	TBC1D5	A	0.750	0.193	0.192	0.78
rs10511297	3q13.13	CD96	A	0.375	0.030	0.171	0.659
rs2615485	4q22.1	DSPP	A	0.750	0.136	0.190	0.625
rs2434316	5q14.1	THBS4	A	0.750	0.257	0.118	0.743
rs6878264	5q14.1	THBS4	B	0.625	0.010	0.010	1.000
rs7800141	7p15.3	DNAH11	B	0.666	0.096	0.154	0.717
rs4746259	10q22.2	PPIAL4G	B	0.750	0.015	0.062	0.794
rs9300471	13q32.2	FARP1	A	0.375	0.030	0.145	0.659
rs1881344	16p13.2	C16orf68	A	0.375	0.030	0.078	0.659
rs2253429	20p13	SIRPB1	B	0.375	0.030	0.0119	0.659
rs2834681	21q22.12	RUNX1	B	0.250	0	0.0623	0.859

rs ID: The unique ID for the identified single nucleotide polymorphisms; HWE: Hardy-Weinberg Equilibrium.