Multigene tracking of quasispecies in viral persistence and clearance of hepatitis C virus

Figure 4 Alignment of nucleotide sequences of E1 and the 5’ half of E2 including HVR1 for the majority sequences and each sequence from each subject A, B, C, E and F at different time points. In the first column, alphabetical labels indicate different samplings, while in the last column the numbers indicate the number of cloned cDNAs (out of 33 assessed for each sample) with SSCP+HD pattern. Dashes indicate identity to the nucleotide at the position in the first sequence.